About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2200217_2200447_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2200217 - 2200447
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTGCCCTCCATT
Flanking Amino Acid:
TYVKLDKLGEGTYATVFKGR
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
73.3
0.52
0.8
64.7
30.8
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
48
-0
2
66.51
44.2

Associated Gene:

Gene:
CDK18
Ensembl Gene ID:
ENSAPLG00000004817
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034932
2186830 - 2203698
16869
ENSAPLT00000022395
2193826 - 2204876
11051
ENSAPLT00000005010
2181040 - 2203698
22659