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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2200563_2200707_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2200563 - 2200707
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACCCAC
U12 Branch Point Sequence:
CTGCCCCAAACC
Flanking Amino Acid:
EGAPCTAIREVSLLKNLKHA
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
48.3
-0.1
1.1
56.1
31
Major PPT
80.8
0.69
0.7
73.2
31.7
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
47.7
-0.1
2
60.47
44.7

Associated Gene:

Gene:
CDK18
Ensembl Gene ID:
ENSAPLG00000004817
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034932
2186830 - 2203698
16869
ENSAPLT00000022395
2193826 - 2204876
11051
ENSAPLT00000017812
2193826 - 2203698
9873
ENSAPLT00000005010
2181040 - 2203698
22659