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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2200950_2201084_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2200950 - 2201084
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
TGAGCGCCAACC
Flanking Amino Acid:
GNLMNVHNVKIFMFQLLRGL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
72.5
0.51
0.8
65.9
30.2
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
40.2
-0.7
2.4
53.21
43.8

Associated Gene:

Gene:
CDK18
Ensembl Gene ID:
ENSAPLG00000004817
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034932
2186830 - 2203698
16869
ENSAPLT00000022395
2193826 - 2204876
11051
ENSAPLT00000017812
2193826 - 2203698
9873
ENSAPLT00000005010
2181040 - 2203698
22659