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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2202487_2202966_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2202487 - 2202966
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GGGCTTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
GTGAATGTAACC
Flanking Amino Acid:
GIDLLMNLLLYEAKSRISAE
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
75.4
0.57
1
68.8
41.9
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
45.2
-0.3
2.1
56.6
41.8

Associated Gene:

Gene:
CDK18
Ensembl Gene ID:
ENSAPLG00000004817
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034932
2186830 - 2203698
16869
ENSAPLT00000022395
2193826 - 2204876
11051
ENSAPLT00000017812
2193826 - 2203698
9873
ENSAPLT00000005010
2181040 - 2203698
22659