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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2203058_2203450_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2203058 - 2203450
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCG
5'SS Class:
major
3'SS Sequence:
TCTCTACCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
CTCTCTCTACCC
Flanking Amino Acid:
LGERVHLLPDNVSIFSLKEI
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
63.8
40.9
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
75.1
0.56
0.8
66.3
34.7
Minor 5ss
35.2
-1.7
3.2
47.3
42.1
Minor BPS
48.9
-0.1
2
62.26
43.8

Associated Gene:

Gene:
CDK18
Ensembl Gene ID:
ENSAPLG00000004817
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022395
2193826 - 2204876
11051
ENSAPLT00000017812
2193826 - 2203698
9873
ENSAPLT00000005010
2181040 - 2203698
22659
ENSAPLT00000034932
2186830 - 2203698
16869