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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2212045_2217421_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2212045 - 2217421
Intron Length:
5377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCCCTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
AAGGCACTAATT
Flanking Amino Acid:
GSCLGGVFKRTLAQSLFALF
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
67.8
43.5
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
79
0.65
0.7
77
25
Minor 5ss
34
-1.8
3.2
42.3
38.1
Minor BPS
45.9
-0.2
2
61.57
42.2

Associated Gene:

Gene:
MFSD4A
Ensembl Gene ID:
ENSAPLG00000004747
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017170
2211815 - 2229439
17625