Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2222546_2224257_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2222546 - 2224257

Intron Length:

1712

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCTGG

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTCACCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TTGTTTTTCACC

Flanking Amino Acid:

TSVQRPHAAGGHDDLFSCCQ

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.8

42.7

Major BPS

0.62

1.4

85.7

34.9

Major PPT

80.5

0.69

0.9

74.7

Minor 5ss

37.8

-1.4

46.8

48.5

Minor BPS

62.1

0.36

1.7

73.03

38.7

Associated Gene:

Gene:

MFSD4A

Ensembl Gene ID:

ENSAPLG00000004747

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017170

2211815 - 2229439

17625

ENSAPLT00000004894

2215913 - 2229439

13527