About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2243203_2244588_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2243203 - 2244588
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAAG
5'SS Class:
major
3'SS Sequence:
TTCTTACCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCTTCTTACCC
Flanking Amino Acid:
SRALRYYYVKNIIKKVNGKK
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.6
40.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79
0.65
0.8
73.3
30.6
Minor 5ss
38.4
-1.3
2.9
48.5
47.2
Minor BPS
65
0.45
1.6
71.85
39.7

Associated Gene:

Gene:
ELK4
Ensembl Gene ID:
ENSAPLG00000004738
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004878
2239159 - 2245722
6564