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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2244805_2245516_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2244805 - 2245516
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CCTTTCTGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.2
0.63
0.9
74.5
39.1
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
65.1
0.55
1.4
75.82
41.6

Associated Gene:

Gene:
ELK4
Ensembl Gene ID:
ENSAPLG00000004738
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004878
2239159 - 2245722
6564