About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2308977_2309365_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2308977 - 2309365
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCGC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTGCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TCCTCCCCACCT
Flanking Amino Acid:
TNSKHIFTASSDCRVKLWNY
Intron Amino Acid Position:
1583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
63.1
43.4
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
68.1
0.41
1
60.9
39.7
Minor 5ss
32.8
-2
3
41.9
44.9
Minor BPS
47.1
-0.1
2.2
68.62
47.8

Associated Gene:

Gene:
KIF21B
Ensembl Gene ID:
ENSAPLG00000004318
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004503
2308877 - 2324660
15784