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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2314458_2314624_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2314458 - 2314624
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCCCTCCTAATC
Flanking Amino Acid:
RKSYDRGQPARPPDVGFTPP
Intron Amino Acid Position:
1208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
75.2
0.57
0.8
72.7
32
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
50.7
0
1.7
59.62
40

Associated Gene:

Gene:
KIF21B
Ensembl Gene ID:
ENSAPLG00000004318
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043028
2303683 - 2325650
21968
ENSAPLT00000025419
2303683 - 2325650
21968
ENSAPLT00000004503
2308877 - 2324660
15784