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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2316450_2316558_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2316450 - 2316558
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGTG
5'SS Class:
major
3'SS Sequence:
CCCCATCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTTCCCCATCC
Flanking Amino Acid:
DNFLKASIDKGLQVAQKEAQ
Intron Amino Acid Position:
1020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
64.1
42.1
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
71.2
0.48
0.8
61.1
34.8
Minor 5ss
26.3
-2.7
3.7
36.9
47.7
Minor BPS
53.3
0.08
2.1
75.79
40.3

Associated Gene:

Gene:
KIF21B
Ensembl Gene ID:
ENSAPLG00000004318
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043028
2303683 - 2325650
21968
ENSAPLT00000025419
2303683 - 2325650
21968
ENSAPLT00000004503
2308877 - 2324660
15784