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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2317357_2317428_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2317357 - 2317428
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCAAA
U12 Branch Point Sequence:
CAGTGCCAAACT
Flanking Amino Acid:
LEADMERLIKKREELALLQE
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
49
-0
1.3
56.7
38.7
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
43.5
-0.4
2.3
61.33
48

Associated Gene:

Gene:
KIF21B
Ensembl Gene ID:
ENSAPLG00000004318
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043028
2303683 - 2325650
21968
ENSAPLT00000025419
2303683 - 2325650
21968
ENSAPLT00000004503
2308877 - 2324660
15784