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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2321184_2321614_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2321184 - 2321614
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TTGACCTCATCC
Flanking Amino Acid:
QNYIREIEELRTKLLESESM
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
64.9
42.8
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
73.8
0.54
0.8
65.4
36.2
Minor 5ss
31.8
-2.1
3
37.6
47.1
Minor BPS
53.5
0.09
1.9
67.61
43.7

Associated Gene:

Gene:
KIF21B
Ensembl Gene ID:
ENSAPLG00000004318
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025419
2303683 - 2325650
21968
ENSAPLT00000004503
2308877 - 2324660
15784
ENSAPLT00000043028
2303683 - 2325650
21968