Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2338769_2339195_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2338769 - 2339195

Intron Length:

427

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTGTCCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTCAT

U12 Branch Point Sequence:

TTGTCCCCACCA

Flanking Amino Acid:

RPKKNPVEIQAGLRSIEEEA

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

1.1

73.6

37.4

Major BPS

64.7

0.37

1.2

39.8

Major PPT

71.4

0.48

0.9

64.1

37.9

Minor 5ss

28.4

-2.5

2.9

41.8

Minor BPS

48.6

-0.1

2.1

68.41

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024836

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033604

2336955 - 2342827

5873

ENSAPLT00000025281

2336358 - 2341695

5338