Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2340522_2341254_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2340522 - 2341254

Intron Length:

733

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

GTTTGCTCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGGTTAT

U12 Branch Point Sequence:

ACACGGTTATCG

Flanking Amino Acid:

KFCPHRVACKRLVCMNMPLN

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.95

0.8

31.7

Major BPS

53.8

0.1

1.4

46.8

46.7

Major PPT

0.58

0.9

69.7

36.7

Minor 5ss

31.7

-2.1

3.3

42.5

44.5

Minor BPS

37.4

-1

2.4

39.67

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024836

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025281

2336358 - 2341695

5338

ENSAPLT00000033604

2336955 - 2342827

5873