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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2346719_2346893_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2346719 - 2346893
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
TTGTCCCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTGTCTTAGACT
Flanking Amino Acid:
SSFFIFSPTNKFRMLCHRIV
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.6
37.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.5
0.55
1
73.9
36.8
Minor 5ss
42.4
-0.8
2.8
53.9
36.9
Minor BPS
59.7
0.39
1.7
75.31
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002552
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002736
2346577 - 2362965
16389