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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2349098_2349437_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2349098 - 2349437
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGGATG
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
TGCTCCTTCACC
Flanking Amino Acid:
IRLLRIFKITRYWTSLSNLV
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
65.5
45.7
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
83.9
0.76
0.7
77
31.7
Minor 5ss
30.8
-2.2
3.3
39.5
46.1
Minor BPS
68.6
0.57
1.8
75.07
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002552
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002736
2346577 - 2362965
16389