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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2349664_2350039_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2349664 - 2350039
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GATCTCCCACCC
Flanking Amino Acid:
FQPEWLTVVQDNANRVLLAL
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
79
0.72
1
69
38.9
Major PPT
71.7
0.49
0.8
62.6
33.1
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
41.2
-0.6
1.9
50.88
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002552
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002736
2346577 - 2362965
16389