About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2351231_2352556_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2351231 - 2352556
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GGCCTTGTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
TGAGCCTTACTC
Flanking Amino Acid:
VLNLVLGVLSGEFTKEREKA
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
66.2
0.36
1
56.6
43.4
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
55.7
0.16
1.7
63.68
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002552
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002736
2346577 - 2362965
16389