Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_235377_239663_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

235377 - 239663

Intron Length:

4287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTCAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

GCTTTACTAACG

Flanking Amino Acid:

IAAIGGPPLAGWLYDYTQTY

Intron Amino Acid Position:

505

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

1.1

77.9

38.6

Major BPS

76.8

0.67

0.9

75.9

Major PPT

86.6

0.82

0.7

81.4

23.5

Minor 5ss

41.4

-1

58.6

45.9

Minor BPS

48.4

-0.2

57.74

43.5

Associated Gene:

Gene:

SLC16A4

Ensembl Gene ID:

ENSAPLG00000015458

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022376

234222 - 245264

11043

ENSAPLT00000035498

234222 - 245673

11452

ENSAPLT00000035282

234222 - 245753

11532

ENSAPLT00000028843

234222 - 245673

11452