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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2354350_2354865_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2354350 - 2354865
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TGTGCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTCTGTGCCT
Flanking Amino Acid:
NVLDFSIVSLGLFTMTLEQI
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
58.6
42
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
80.8
0.69
0.9
77.2
37
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
43.2
-0.4
3.8
82.48
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002552
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002736
2346577 - 2362965
16389