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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2355006_2359654_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2355006 - 2359654
Intron Length:
4649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TTGCAACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTGCTTGCAACC
Flanking Amino Acid:
DDTNVANSSLEKIEYAFLIF
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
62.2
43.7
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
65.7
0.35
0.9
55.5
40
Minor 5ss
30.2
-2.3
3.2
35.3
42.3
Minor BPS
42.2
-0.6
2.1
50.78
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002552
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002736
2346577 - 2362965
16389