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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2359761_2362516_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
2359761 - 2362516
Intron Length:
2756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATCTTTT
5'SS Class:
weak_minor
3'SS Sequence:
CTCTTCCTCTCAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CCTTCCTTAACT
Flanking Amino Acid:
RKACISIVEWKPFEIIILLT
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
74.2
37
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
82.3
0.73
0.7
80.3
25
Minor 5ss
83.1
1.11
1.4
84
26.4
Minor BPS
87
1.25
1
91.67
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002552
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002736
2346577 - 2362965
16389