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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_239758_240521_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
239758 - 240521
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTACAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
AATTACTGATTT
Flanking Amino Acid:
GFLALVLPVLVDLVGVPKLH
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
76.6
33.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
69.9
0.45
1
68.7
41.4
Minor 5ss
30.5
-2.2
3.2
36.4
42
Minor BPS
49.3
0.03
1.9
69.95
40.6

Associated Gene:

Gene:
SLC16A4
Ensembl Gene ID:
ENSAPLG00000015458
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028843
234222 - 245673
11452
ENSAPLT00000022376
234222 - 245264
11043
ENSAPLT00000016137
238253 - 245673
7421
ENSAPLT00000035498
234222 - 245673
11452
ENSAPLT00000035282
234222 - 245753
11532