Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_240734_241970_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

240734 - 241970

Intron Length:

1237

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAAAAT

U12 Branch Point Sequence:

TCTTCTTTGAGG

Flanking Amino Acid:

MDASYLISVAGITETVSQLL

Intron Amino Acid Position:

372

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

75.9

35.2

Major BPS

0.1

59.7

32.6

Major PPT

82.8

0.74

0.7

76.2

32.4

Minor 5ss

38.8

-1.3

2.9

45.4

43.9

Minor BPS

61.3

0.21

1.7

65.81

42.8

Associated Gene:

Gene:

SLC16A4

Ensembl Gene ID:

ENSAPLG00000015458

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016137

238253 - 245673

7421

ENSAPLT00000035498

234222 - 245673

11452

ENSAPLT00000035282

234222 - 245753

11532

ENSAPLT00000028843

234222 - 245673

11452

ENSAPLT00000022376

234222 - 245264

11043