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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_244062_245045_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
244062 - 245045
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
GATCTGAACTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTGATCTGAACT
Flanking Amino Acid:
AWVAVLHFFLVNVLVMGMLK
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
59.9
0.22
1.1
55.6
43.4
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
60
0.39
1.5
73.08
43.7

Associated Gene:

Gene:
SLC16A4
Ensembl Gene ID:
ENSAPLG00000015458
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028843
234222 - 245673
11452
ENSAPLT00000022376
234222 - 245264
11043
ENSAPLT00000016137
238253 - 245673
7421
ENSAPLT00000035498
234222 - 245673
11452