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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_245156_245657_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
245156 - 245657
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AAATTCTCATTT
Flanking Amino Acid:
MQQQDGERKEEKLEP
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
73.4
37.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.3
0.79
0.8
77.2
36
Minor 5ss
33
-1.9
3.2
43.8
43.8
Minor BPS
48.7
-0
1.7
64.52
39.9

Associated Gene:

Gene:
SLC16A4
Ensembl Gene ID:
ENSAPLG00000015458
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016137
238253 - 245673
7421
ENSAPLT00000035498
234222 - 245673
11452
ENSAPLT00000028843
234222 - 245673
11452