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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2462402_2462846_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2462402 - 2462846
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
TCGGCATTATTC
Flanking Amino Acid:
YIHSAGIIHRDLKPGNLAVN
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
62.4
0.31
1
64
32.1
Major PPT
78.8
0.65
0.9
77.4
36.9
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
46.5
-0.2
1.9
54.71
44

Associated Gene:

Gene:
MAPK13
Ensembl Gene ID:
ENSAPLG00000002168
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025762
2461232 - 2465340
4109