Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2464160_2465266_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2464160 - 2465266

Intron Length:

1107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTGTG

5'SS Class:

major

3'SS Sequence:

TACTGCCTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTTAC

U12 Branch Point Sequence:

TTCTTCTAGACT

Flanking Amino Acid:

SAPSYHGFQDFYLVMPYMRT

Intron Amino Acid Position:

103

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

70.9

39.3

Major BPS

63.8

0.34

1.2

57.4

41.4

Major PPT

73.6

0.53

0.9

70.2

36.1

Minor 5ss

38.9

-1.3

3.4

55.1

43.4

Minor BPS

65.1

0.56

1.7

82.23

39.8

Associated Gene:

Gene:

MAPK13

Ensembl Gene ID:

ENSAPLG00000002168

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025762

2461232 - 2465340

4109

ENSAPLT00000002278

2462346 - 2469939

7594