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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2465825_2469820_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2465825 - 2469820
Intron Length:
3996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
PVGSGAYGSVCSAIDKKTGE
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79
0.65
0.9
73.5
37
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
MAPK13
Ensembl Gene ID:
ENSAPLG00000002168
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025311
2465152 - 2469939
4788
ENSAPLT00000002278
2462346 - 2469939
7594