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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2475802_2476340_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2475802 - 2476340
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTCGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTGTACTTAACG
Flanking Amino Acid:
YLINRMPSHEARNYIQSLSY
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
74.2
36.1
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
80.7
0.69
0.8
75.8
32.8
Minor 5ss
29.2
-2.4
3.1
40
45.5
Minor BPS
74.4
0.63
1.6
76.54
40.8

Associated Gene:

Gene:
MAPK14
Ensembl Gene ID:
ENSAPLG00000002603
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045636
2474697 - 2497773
23077