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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_24788_27176_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24788 - 27176
Intron Length:
2389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GTCTCCTTAGCT
Flanking Amino Acid:
THFTFKDLYFKMFDVGGQRS
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
73.6
0.53
0.8
65
36.3
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
73.3
0.81
1.6
84.91
41.5

Associated Gene:

Gene:
GNAI3
Ensembl Gene ID:
ENSAPLG00000023137
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025578
1975 - 29054
27080