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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2486988_2487352_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2486988 - 2487352
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
CTTTTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
CTTTTGTTCACA
Flanking Amino Acid:
PAKSLEEFNDVYLVTHLMGA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.2
65.3
40.8
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
84.3
0.77
0.8
79.2
32.9
Minor 5ss
36.6
-1.5
3.1
45.5
42.9
Minor BPS
49.5
-0
2.4
70.02
42.9

Associated Gene:

Gene:
MAPK14
Ensembl Gene ID:
ENSAPLG00000002603
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047739
2472882 - 2497773
24892
ENSAPLT00000045636
2474697 - 2497773
23077
ENSAPLT00000002670
2474697 - 2497773
23077