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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2487412_2490884_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2487412 - 2490884
Intron Length:
3473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACTTTACCT
Flanking Amino Acid:
RLLKHMKHENVIGLLDVFTP
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
64.3
0.53
1.7
80.13
42.2

Associated Gene:

Gene:
MAPK14
Ensembl Gene ID:
ENSAPLG00000002603
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045636
2474697 - 2497773
23077
ENSAPLT00000002670
2474697 - 2497773
23077
ENSAPLT00000047739
2472882 - 2497773
24892