Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_249089_249662_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

249089 - 249662

Intron Length:

574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CCTTGCCTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAG

U12 Branch Point Sequence:

CTTGCCTCACAG

Flanking Amino Acid:

CTDSQGLNLGCRGTLSDEHA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

79.5

28.3

Major BPS

54.8

0.12

1.7

57.4

49.1

Major PPT

75.1

0.56

0.8

32.2

Minor 5ss

-1.9

2.8

41.3

38.3

Minor BPS

-0.5

2.1

52.48

47.8

Associated Gene:

Gene:

LAMTOR5

Ensembl Gene ID:

ENSAPLG00000028465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047838

248411 - 249834

1424

ENSAPLT00000035030

248411 - 250656

2246