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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2503865_2504840_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2503865 - 2504840
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCCAT
U12 Branch Point Sequence:
TGCAGTTCCATT
Flanking Amino Acid:
IFGTSHHISVGSFSILNLVV
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
59.5
0.24
1.5
72.5
43.5
Major PPT
69.8
0.45
1
60.8
44.7
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
38.5
-0.8
2.1
52.86
42.9

Associated Gene:

Gene:
SLC26A8
Ensembl Gene ID:
ENSAPLG00000002988
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018918
2500462 - 2522681
22220
ENSAPLT00000003040
2499685 - 2521845
22161
ENSAPLT00000037794
2498253 - 2521845
23593