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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2505017_2505501_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2505017 - 2505501
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGAT
5'SS Class:
major
3'SS Sequence:
TTGTTCCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTTCCATACAG
Flanking Amino Acid:
SVTFLTGIIQLLLGCFCLGS
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
68.4
36.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79.2
0.66
0.9
73.8
36
Minor 5ss
30.1
-2.3
3.7
46.1
49.1
Minor BPS
49.3
-0.1
2.1
62.74
44.4

Associated Gene:

Gene:
SLC26A8
Ensembl Gene ID:
ENSAPLG00000002988
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037794
2498253 - 2521845
23593
ENSAPLT00000018918
2500462 - 2522681
22220
ENSAPLT00000003040
2499685 - 2521845
22161