Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2505667_2506350_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2505667 - 2506350

Intron Length:

684

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGC|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

AATTCCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATAAT

U12 Branch Point Sequence:

TGTATGATAATT

Flanking Amino Acid:

FHKGPRDIFCDIFHYFRALP

Intron Amino Acid Position:

257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.3

68.5

38.7

Major BPS

72.6

0.56

1.2

72.3

40.4

Major PPT

81.6

0.71

0.8

35.4

Minor 5ss

32.9

-1.9

3.2

35.5

41.5

Minor BPS

46.5

-0.1

2.2

69.97

41.1

Associated Gene:

Gene:

SLC26A8

Ensembl Gene ID:

ENSAPLG00000002988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037794

2498253 - 2521845

23593

ENSAPLT00000018918

2500462 - 2522681

22220

ENSAPLT00000003040

2499685 - 2521845

22161