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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2506501_2507601_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2506501 - 2507601
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TAATCCCTGATA
Flanking Amino Acid:
PIAFPMELLLIITGTIISNR
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
59.7
0.3
1.6
68.98
36.9

Associated Gene:

Gene:
SLC26A8
Ensembl Gene ID:
ENSAPLG00000002988
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037794
2498253 - 2521845
23593
ENSAPLT00000018918
2500462 - 2522681
22220
ENSAPLT00000003040
2499685 - 2521845
22161