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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2509062_2509823_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2509062 - 2509823
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GCATCTCTAATA
Flanking Amino Acid:
IQEKTGGRTQLAAMIGATIM
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
82.7
0.74
0.9
81.3
36
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
54.4
0.13
1.7
61.44
38.9

Associated Gene:

Gene:
SLC26A8
Ensembl Gene ID:
ENSAPLG00000002988
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037794
2498253 - 2521845
23593
ENSAPLT00000018918
2500462 - 2522681
22220
ENSAPLT00000003040
2499685 - 2521845
22161