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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2511164_2512097_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2511164 - 2512097
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CTCTTGTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TCTTGTTCAAAG
Flanking Amino Acid:
TLWRQDKYHLVIWLGTFAAV
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.7
38.4
Major BPS
75.8
0.64
1
65.8
41
Major PPT
68.7
0.42
1
69.4
34.7
Minor 5ss
37.9
-1.4
2.7
47.5
36
Minor BPS
47
-0.3
2.1
56.38
45.2

Associated Gene:

Gene:
SLC26A8
Ensembl Gene ID:
ENSAPLG00000002988
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018918
2500462 - 2522681
22220
ENSAPLT00000003040
2499685 - 2521845
22161
ENSAPLT00000037794
2498253 - 2521845
23593