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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2517093_2518394_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2517093 - 2518394
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGCTTT
5'SS Class:
major
3'SS Sequence:
CTTTCCATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
GTATTCTCCACT
Flanking Amino Acid:
VCDQPLPPPRIPYTARLVKR
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.4
69.7
43.7
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
74.2
0.54
0.8
66.6
34.1
Minor 5ss
44.8
-0.6
3
57.2
46.9
Minor BPS
52
0.14
2
73.65
42.9

Associated Gene:

Gene:
SLC26A8
Ensembl Gene ID:
ENSAPLG00000002988
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037794
2498253 - 2521845
23593
ENSAPLT00000018918
2500462 - 2522681
22220
ENSAPLT00000003040
2499685 - 2521845
22161