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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2518755_2520082_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2518755 - 2520082
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATTACTCTAATG
Flanking Amino Acid:
DLQGSDLLKEIIHMFCDTGI
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
81.8
0.71
0.8
76.6
31.4
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
54.9
0.02
1.8
63.23
38.9

Associated Gene:

Gene:
SLC26A8
Ensembl Gene ID:
ENSAPLG00000002988
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037794
2498253 - 2521845
23593
ENSAPLT00000018918
2500462 - 2522681
22220
ENSAPLT00000003040
2499685 - 2521845
22161