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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_252464_252505_F

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
252464 - 252505
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTTTGCTTT
5'SS Class:
weak_minor
3'SS Sequence:
CTTGCTTTCTCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TATTTTTTAGCT
Flanking Amino Acid:
ASGAFHLRQFCSLSIL
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.3
56.8
42.5
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
82
0.72
0.8
80.1
31.9
Minor 5ss
68
0.61
2.2
84.5
33
Minor BPS
69.9
0.7
1.5
84.59
36

Associated Gene:

Gene:
PROK1
Ensembl Gene ID:
ENSAPLG00000015823
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032045
252445 - 254308
1864