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Intron Name: Anas_platyrhynchos_platyrhynchos_27_253459_254188_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

253459 - 254188

Intron Length:

730

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGG|GCCAAGCAC

5'SS Class:

weak_major

3'SS Sequence:

TTTCTCTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

ATTTCCCCATCC

Flanking Amino Acid:

GGNGAVQRPWVPFLGKRQHH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.4

0.2

1.3

52.1

41.5

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

85.5

0.8

0.6

81.7

23.2

Minor 5ss

-4

3.5

15.7

28.8

Minor BPS

49.5

-0

2.1

70.29

40.6

Associated Gene:

Gene:

PROK1

Ensembl Gene ID:

ENSAPLG00000015823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023905

249744 - 254308

4565

ENSAPLT00000016496

251958 - 254308

2351