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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2535148_2538444_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2535148 - 2538444
Intron Length:
3297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TGAGATGTAACT
Flanking Amino Acid:
SLSMGGRASCRPDTQHRGPA
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
35
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
87.5
0.84
0.7
85.1
29.7
Minor 5ss
40.1
-1.1
3
53.2
44.1
Minor BPS
46.1
-0.2
2.2
66.24
44.3

Associated Gene:

Gene:
SRPK1
Ensembl Gene ID:
ENSAPLG00000003371
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045176
2534130 - 2551866
17737