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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2538564_2539730_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2538564 - 2539730
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
CTTGCTATATCA
Flanking Amino Acid:
EQEDPNDYCKGGYHLVKIGD
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
70.2
0.5
1
72.1
33
Major PPT
77.7
0.62
0.9
70.1
40.4
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
48.1
-0.1
2
63.52
43.3

Associated Gene:

Gene:
SRPK1
Ensembl Gene ID:
ENSAPLG00000003371
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035176
2536818 - 2551866
15049
ENSAPLT00000029523
2527863 - 2551298
23436
ENSAPLT00000003474
2527863 - 2551866
24004
ENSAPLT00000045176
2534130 - 2551866
17737
ENSAPLT00000040175
2536803 - 2551298
14496