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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2539840_2540190_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2539840 - 2540190
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CGTGTGTGCATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
ATTTACTTACCG
Flanking Amino Acid:
FSTVWLAWDIQGKRFVAMKV
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
58.9
0.2
1
52.7
41.7
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
62
0.24
1.9
70.93
41.9

Associated Gene:

Gene:
SRPK1
Ensembl Gene ID:
ENSAPLG00000003371
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040175
2536803 - 2551298
14496
ENSAPLT00000035176
2536818 - 2551866
15049
ENSAPLT00000029523
2527863 - 2551298
23436
ENSAPLT00000003474
2527863 - 2551866
24004
ENSAPLT00000045176
2534130 - 2551866
17737