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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2540279_2540478_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2540279 - 2540478
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GCACGCAAAACT
Flanking Amino Acid:
ALDEIKLLKSVRNSDPNDPN
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
41.1
-0.5
2.2
56.01
45.5

Associated Gene:

Gene:
SRPK1
Ensembl Gene ID:
ENSAPLG00000003371
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003474
2527863 - 2551866
24004
ENSAPLT00000045176
2534130 - 2551866
17737
ENSAPLT00000040175
2536803 - 2551298
14496
ENSAPLT00000035176
2536818 - 2551866
15049
ENSAPLT00000029523
2527863 - 2551298
23436